MolNFT v1 · #140475 · protein
Structure of human gliomedin
5YBY: “Structure of human gliomedin”. X-ray diffraction, 4 ligands (NAG, NA, CA). MolNFT v1 #140475 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YBY
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6ZMI3
- Ligands
- NAG, NA, CA, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 245 | — | Q6ZMI3 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- NA · Sodium ion · metal · 4 copies · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- PO4 · Phosphate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6ZMI3
- Elsewhere: RCSB PDB 5YBY · PDBe 5YBY · UniProt Q6ZMI3
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