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Structure of human gliomedin

Analyse Structure of human gliomedin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YBY
Type: protein
Length: 245 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gliomedin
UniProt: Q6ZMI3
Ligands: NAG, NA, CA, PO4

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gliomedin	protein	245	5% helix, 55% strand	Q6ZMI3

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
NA · Sodium ion · metal · 4 copies · chains A
CA · Calcium ion · metal · 2 copies · chains A
PO4 · Phosphate ion · ion · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 glycan (N-glycosylation).

Compared structures

5YBY · Structure of human Gliomedin · the same entry in another collection · chain A against A, TM-score 1.00
Q6ZMI3 · AlphaFold monomer V2.0 prediction for gliomedin (Q6ZMI3) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6ZMI3
Elsewhere: RCSB PDB 5YBY · PDBe 5YBY · UniProt Q6ZMI3

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