MolNFT v1 · #140330 · protein + DNA
Crystal structure of PAFAN1 bound to 1NT 5'FLAP DNA with gap
5Y7G: “Crystal structure of PAFAN1 bound to 1NT 5'FLAP DNA with gap”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #140330 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y7G
- Type
- protein + DNA
- Length
- 1,768 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9I2N0
- Ligands
- CA
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 542 | — | Q9I2N0 |
| B | — | protein | 543 | — | Q9I2N0 |
| C | — | protein | 540 | — | Q9I2N0 |
| D, F, H | — | dna | 10 | — | — |
| E, G, I | — | dna | 24 | — | — |
| J, L | — | dna | 14 | — | — |
| N | — | dna | 13 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 5 copies · chains A, J, B, L, C, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y7G · Crystal structure of paFAN1 bound to 1nt 5'flap DNA with gap · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I2N0
- Elsewhere: RCSB PDB 5Y7G · PDBe 5Y7G · UniProt Q9I2N0
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