MolNFT v1 · #140198 · protein
Crystal structure of human LGI1 eptp-ADAM22 complex
5Y2Z: “Crystal structure of human LGI1 eptp-ADAM22 complex”. X-ray diffraction, 4 ligands (NAG, FUC, BMA). MolNFT v1 #140198 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y2Z
- Type
- protein
- Length
- 4,820 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9P0K1, O95970
- Ligands
- NAG, FUC, BMA, CA
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 482 | — | Q9P0K1 |
| C | — | protein | 473 | — | Q9P0K1 |
| E | — | protein | 467 | — | Q9P0K1 |
| G | — | protein | 462 | — | Q9P0K1 |
| I | — | protein | 481 | — | Q9P0K1 |
| K | — | protein | 486 | — | Q9P0K1 |
| B, D, F, J, L | — | protein | 328 | — | O95970 |
| H | — | protein | 329 | — | O95970 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 21 copies · chains B, D, F, H, J, L
- FUC · alpha-L-fucopyranose · sugar · 6 copies · chains B, D, F, H, J, L
- BMA · beta-D-mannopyranose · sugar · 2 copies
- CA · Calcium ion · metal · 24 copies · chains A, C, E, G, I, K, B, D, F, H, J, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y2Z · Crystal structure of human LGI1 EPTP-ADAM22 complex · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P0K1
- Every structure of UniProt O95970
- Elsewhere: RCSB PDB 5Y2Z · PDBe 5Y2Z · UniProt Q9P0K1 · UniProt O95970
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.