MolNFT v1 · #140052 · protein
Structure of transferase
5XYK · Putative cytoplasmic protein: “Structure of transferase”. X-ray diffraction, 3 ligands (ARG, UDP, MN), 2 pockets (best druggability 0.44). MolNFT v1 #140052 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XYK
- Type
- protein
- Length
- 303 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative cytoplasmic protein
- UniProt
- E8XCX6
- Ligands
- ARG, UDP, MN
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | Putative cytoplasmic protein | protein | 303 | 41% helix, 21% strand | E8XCX6 |
Ligands and binding sites
- ARG · Arginine · ligand · chains E
- UDP · Uridine-5'-diphosphate · ligand · chains E
- MN · Manganese (II) ion · metal · chains E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.44 | 0.78 | 17 | UDP |
| 2 | 96 | 0.42 | 0.78 | 20 | empty |
Compared structures
- 5XYK · Structure of Transferase · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E8XCX6
- Elsewhere: RCSB PDB 5XYK · PDBe 5XYK · UniProt E8XCX6
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