MolNFT v1 · #139967 · protein

Earp bound with dtdp-rhamnose (co-crystal)

5XVR: “Earp bound with dtdp-rhamnose (co-crystal)”. X-ray diffraction, 2 ligands (TRH, SO4). MolNFT v1 #139967 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XVR
Type: protein
Length: 757 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: E6MVV9
Ligands: TRH, SO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	381	—	E6MVV9
B	—	protein	376	—	E6MVV9

Ligands and binding sites

TRH · 2'-deoxy-thymidine-beta-L-rhamnose · ligand · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5XVR · EarP bound with dTDP-rhamnose (co-crystal) · the same entry in another collection · chain A against A, TM-score 1.00
E6MVV9 · AlphaFold monomer V2.0 prediction for protein-arginine rhamnosyltransferase (E6MVV9) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E6MVV9
Elsewhere: RCSB PDB 5XVR · PDBe 5XVR · UniProt E6MVV9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.