MolNFT v1 · #139906 · protein
Crystal structure of transketolase in complex with tpp intermediate VII from pichia stipitis
5XTX: “Crystal structure of transketolase in complex with tpp intermediate VII from pichia stipitis”. X-ray diffraction, 2 ligands (8ML, CA). MolNFT v1 #139906 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XTX
- Type
- protein
- Length
- 675 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P34736
- Ligands
- 8ML, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 675 | — | P34736 |
Ligands and binding sites
- 8ML · 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methylidene-2-[(2S,3S,4R,5R)-1,2,3,4,5-pentakis(oxidanyl)-6-phosphonooxy-hexan-2-yl]-1,3-thiazolidin-5-yl]ethyl phosphono hydrogen phosphate · ligand · chains A
- CA · Calcium ion · metal
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XTX · Crystal Structure of Transketolase in complex with TPP intermediate VII from Pichia… · the same entry in another collection · chain A against A, TM-score 1.00
- P34736 · AlphaFold monomer V2.0 prediction for transketolase (P34736) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P34736
- Elsewhere: RCSB PDB 5XTX · PDBe 5XTX · UniProt P34736
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