MolNFT v1 · #139842 · protein
Crystal structure of transketolase contains cysteinesufonic acid from pichia stipitis
5XRY: “Crystal structure of transketolase contains cysteinesufonic acid from pichia stipitis”. X-ray diffraction, 1 ligand (CA), 5 pockets (best druggability 0.59). MolNFT v1 #139842 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5XRY
- Type
- protein
- Length
- 675 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transketolase
- EC
- 2.2.1.1
- UniProt
- P34736
- Ligands
- CA
- Pockets
- 5 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transketolase (EC 2.2.1.1) | protein | 675 | 45% helix, 13% strand | P34736 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 276 | 0.59 | 0.79 | 46 | PEG |
| 2 | 74 | 0.48 | 0.83 | 24 | CA |
| 3 | 90 | 0.38 | 0.76 | 17 | empty |
| 4 | 59 | 0.32 | 0.76 | 16 | empty |
| 5 | 72 | 0.29 | 0.73 | 16 | empty |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 5XRY · Crystal Structure of Transketolase contains cysteinesufonic acid from Pichia Stipitis · the same entry in another collection · chain A against A, TM-score 1.00
- P34736 · AlphaFold monomer V2.0 prediction for transketolase (P34736) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P34736
- Elsewhere: RCSB PDB 5XRY · PDBe 5XRY · UniProt P34736
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