MolNFT v1 · #139304 · protein

Lanthanoid tagging via an unnatural amino acid for protein structure characterization

5XBO · Polyubiquitin-B: “Lanthanoid tagging via an unnatural amino acid for protein structure characterization”. Solution nmr, 1 ligand (TB). MolNFT v1 #139304 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XBO
Type: protein
Length: 125 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyubiquitin-B; UV excision repair protein RAD23 homolog a
UniProt: P0CG47, P54725
Ligands: TB

Structure

solution nmr · 2 distinct chains · 40% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyubiquitin-B	protein	76	24% helix, 34% strand	P0CG47
B	UV excision repair protein RAD23 homolog a	protein	49	65% helix, 0% strand	P54725

Ligands and binding sites

TB · Terbium(iii) ion · metal

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 356 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5XBO · Lanthanoid tagging via an unnatural amino acid for protein structure characterization · the same entry in another collection · chain A against A, TM-score 1.00
P54725 · AlphaFold monomer V2.0 prediction for UV excision repair protein RAD23 homolog a (P54725) · a predicted model of the same protein · chain B against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0CG47
Every structure of UniProt P54725
Elsewhere: RCSB PDB 5XBO · PDBe 5XBO · UniProt P0CG47 · UniProt P54725

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