MolNFT v1 · #139177 · protein

Crystal structure of paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase

5X7G: “Crystal structure of paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase”. X-ray diffraction, 2 ligands (CA, NA), 1 pocket (best druggability 0.66). MolNFT v1 #139177 on GenesisL1: 3D structure, binding sites and…

PDB: 5X7G
Type: protein
Length: 700 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cycloisomaltooligosaccharide glucanotransferase
EC: 2.4.1.248
UniProt: G9MBW2
Ligands: CA, NA
Pockets: 1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cycloisomaltooligosaccharide glucanotransferase (EC 2.4.1.248)	protein	700	20% helix, 39% strand	G9MBW2

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
NA · Sodium ion · metal · chains A
GOL · Glycerol · additive · 4 copies · chains A
MLI · Malonate ion · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	532	0.66	0.77	69	empty

Compared structures

5X7G · Crystal Structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G9MBW2
Elsewhere: RCSB PDB 5X7G · PDBe 5X7G · UniProt G9MBW2

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