MolNFT v1 · #138941 · protein
Crystal structure of human secreted phospholipase A2 group iie with compound 8
5WZS: “Crystal structure of human secreted phospholipase A2 group iie with compound 8”. X-ray diffraction, 3 ligands (7W9, CA, CL). MolNFT v1 #138941 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WZS
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NZK7
- Ligands
- 7W9, CA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 123 | — | Q9NZK7 |
Ligands and binding sites
- 7W9 · 2-[2-methyl-1-(naphthalen-1-ylmethyl)-3-oxamoyl-indol-4-yl]oxyethanoic acid · ligand · chains A
- CA · Calcium ion · metal · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WZS · Crystal structure of human secreted phospholipase A2 group IIE with Compound 8 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NZK7 · AlphaFold monomer V2.0 prediction for group iie secretory phospholipase A2 (Q9NZK7) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NZK7
- Elsewhere: RCSB PDB 5WZS · PDBe 5WZS · UniProt Q9NZK7
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