MolNFT v1 · #138900 · protein
Human SNX5 px domain in complex with chlamydia ince C terminus
5WY2 · Sorting nexin-5: “Human SNX5 px domain in complex with chlamydia ince C terminus”. X-ray diffraction, 2 pockets (best druggability 0.47). MolNFT v1 #138900 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WY2
- Type
- protein
- Length
- 329 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sorting nexin-5; Ince
- UniProt
- Q9Y5X3, B7SCI5
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 3 distinct chains · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sorting nexin-5 | protein | 138 | 51% helix, 19% strand | Q9Y5X3 |
| B, D | Ince | protein | 21 | 0% helix, 48% strand | B7SCI5 |
| C | Sorting nexin-5 | protein | 149 | 50% helix, 17% strand | Q9Y5X3 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.47 | 0.80 | 30 | empty |
| 2 | 54 | 0.27 | 0.74 | 15 | empty |
Interfaces
3 interfaces between chains.
- C–D · 655 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 642 Ų buried · 11 hydrogen bonds · protein-protein
- A–C · 316 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5X3
- Every structure of UniProt B7SCI5
- Elsewhere: RCSB PDB 5WY2 · PDBe 5WY2 · UniProt Q9Y5X3 · UniProt B7SCI5
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