MolNFT v1 · #138103 · protein
Crystal structure of lactate dehydrogenase a in complex with inhibitor compound 23 and zinc
5W8I: “Crystal structure of lactate dehydrogenase a in complex with inhibitor compound 23 and zinc”. X-ray diffraction, 2 ligands (9YD, ZN). MolNFT v1 #138103 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5W8I
- Type
- protein
- Length
- 1,315 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00338
- Ligands
- 9YD, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | — | protein | 329 | — | P00338 |
| C | — | protein | 328 | — | P00338 |
Ligands and binding sites
- 9YD · 2-[3-(3,4-difluorophenyl)-5-hydroxy-1H-pyrazol-1-yl]-1, 3-thiazole-4-carboxylic acid · ligand · 3 copies · chains A, C, D
- ZN · Zinc ion · metal · 5 copies · chains A, C, D
- CIT · Citric acid · additive · 4 copies · chains A, B, C, D
- DMS · Dimethyl sulfoxide · additive · 4 copies · chains A, B, C, D
- MLA · Malonic acid · additive · chains B
- GOL · Glycerol · additive · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5W8I · Crystal Structure of Lactate Dehydrogenase A in complex with inhibitor compound 23 and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00338
- Elsewhere: RCSB PDB 5W8I · PDBe 5W8I · UniProt P00338
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