MolNFT v1 · #138080 · protein

Cryoem structure of the segment, dliikgisvhi, assembled into a triple- helical fibril

5W7V · Tar DNA-binding protein 43: “Cryoem structure of the segment, dliikgisvhi, assembled into a triple- helical fibril”. Electron microscopy. MolNFT v1 #138080 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5W7V
Type: protein
Length: 88 residues
Chains: 9
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tar DNA-binding protein 43
UniProt: Q13148

Structure

electron microscopy · 3 distinct chains · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
1, 3, 2, 6, 5, 4, 7	Tar DNA-binding protein 43	protein	11	0% helix, 0% strand	Q13148
0	Tar DNA-binding protein 43	protein	6	0% helix, 0% strand	Q13148
8	Tar DNA-binding protein 43	protein	5	0% helix, 0% strand	Q13148

Interfaces

12 interfaces between chains.

3–2 · 179 Å² buried · 2 hydrogen bonds · protein-protein
5–4 · 162 Å² buried · 2 hydrogen bonds · protein-protein
1–0 · 136 Å² buried · 0 hydrogen bonds · protein-protein
1–2 · 122 Å² buried · 1 hydrogen bond · protein-protein
6–5 · 120 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5W7V · CryoEM structure of the segment, DLIIKGISVHI, assembled into a triple-helical fibril · the same entry in another collection · chain 8 against 8, TM-score 1.00
Q13148 · AlphaFold monomer V2.0 prediction for tar DNA-binding protein 43 (Q13148) · a predicted model of the same protein · chain 8 against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13148
Elsewhere: RCSB PDB 5W7V · PDBe 5W7V · UniProt Q13148

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