Research workbench
Cryoem structure of the segment, dliikgisvhi, assembled into a triple- helical fibril
Analyse Cryoem structure of the segment, dliikgisvhi, assembled into a triple- helical… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5W7V
- Type
- protein
- Length
- 88 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tar DNA-binding protein 43
- UniProt
- Q13148
Structure
electron microscopy · 3 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1, 3, 2, 6, 5, 4, 7 | Tar DNA-binding protein 43 | protein | 11 | 0% helix, 0% strand | Q13148 |
| 0 | Tar DNA-binding protein 43 | protein | 6 | 0% helix, 0% strand | Q13148 |
| 8 | Tar DNA-binding protein 43 | protein | 5 | 0% helix, 0% strand | Q13148 |
Interfaces
12 interfaces between chains.
- 3–2 · 179 Ų buried · 2 hydrogen bonds · protein-protein
- 5–4 · 162 Ų buried · 2 hydrogen bonds · protein-protein
- 1–0 · 136 Ų buried · 0 hydrogen bonds · protein-protein
- 1–2 · 122 Ų buried · 1 hydrogen bond · protein-protein
- 6–5 · 120 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5W7V · CryoEM structure of the segment, DLIIKGISVHI, assembled into a triple-helical fibril · the same entry in another collection · chain 8 against 8, TM-score 1.00
- Q13148 · AlphaFold monomer V2.0 prediction for tar DNA-binding protein 43 (Q13148) · a predicted model of the same protein · chain 8 against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13148
- Elsewhere: RCSB PDB 5W7V · PDBe 5W7V · UniProt Q13148
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