MolNFT v1 · #137854 · protein

Crystal structure of mouse protocadherin-15 EC4-7

5W1D: “Crystal structure of mouse protocadherin-15 EC4-7”. X-ray diffraction, 2 ligands (CA, K), 1 pocket (best druggability 0.34). MolNFT v1 #137854 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5W1D
Type: protein
Length: 405 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protocadherin-15
UniProt: Q99PJ1
Ligands: CA, K
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protocadherin-15	protein	405	1% helix, 43% strand	Q99PJ1

Ligands and binding sites

CA · Calcium ion · metal · 6 copies · chains A
K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.34	0.74	17	empty

Compared structures

5W1D · Crystal Structure of Mouse Protocadherin-15 EC4-7 · the same entry in another collection · chain A against A, TM-score 1.00
Q99PJ1 · AlphaFold monomer V2.0 prediction for protocadherin-15 (Q99PJ1) · a predicted model of the same protein · chain A against A, TM-score 0.49

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99PJ1
Elsewhere: RCSB PDB 5W1D · PDBe 5W1D · UniProt Q99PJ1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.