MolNFT v1 · #137771 · protein
Crystal structure of the wbkc N-formyltransferase (F142A variant) from brucella melitensis
5VYT: “Crystal structure of the wbkc N-formyltransferase (F142A variant) from brucella melitensis”. X-ray diffraction, 3 ligands (GDP, FON, CL). MolNFT v1 #137771 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VYT
- Type
- protein
- Length
- 1,007 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F8WJP6
- Ligands
- GDP, FON, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 248 | — | F8WJP6 |
| B | — | protein | 252 | — | F8WJP6 |
| C | — | protein | 256 | — | F8WJP6 |
| D | — | protein | 251 | — | F8WJP6 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- FON · N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid · ligand · 3 copies · chains A, B, C
- CL · Chloride ion · ion · 2 copies · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VYT · Crystal structure of the WbkC N-formyltransferase (F142A variant) from Brucella melitensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F8WJP6
- Elsewhere: RCSB PDB 5VYT · PDBe 5VYT · UniProt F8WJP6
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