MolNFT v1 · #137768 · protein
Crystal structure of the N-formyltransferase RV3404C from mycobacterium tuberculosis in complex with ydp-QUI4N and folinic acid
5VYQ: “Crystal structure of the N-formyltransferase RV3404C from mycobacterium tuberculosis in complex with…”. X-ray diffraction, 7 ligands (EP1, 0FX, TYD). MolNFT v1 #137768 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VYQ
- Type
- protein
- Length
- 470 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- R4MIX2
- Ligands
- EP1, 0FX, TYD, NA, LI, K, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 236 | — | R4MIX2 |
| B | — | protein | 234 | — | R4MIX2 |
Ligands and binding sites
- EP1 · 3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid · ligand · 2 copies · chains A, B
- 0FX · dTDP-4-amino-4,6-dideoxyglucose · ligand · chains A
- TYD · Thymidine-5'-diphosphate · ligand · chains B
- NA · Sodium ion · metal · 4 copies · chains A, B
- LI · Lithium ion · metal · chains A
- K · Potassium ion · metal · chains B
- CL · Chloride ion · ion · 3 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VYQ · Crystal structure of the N-formyltransferase Rv3404c from mycobacterium tuberculosis in… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt R4MIX2
- Elsewhere: RCSB PDB 5VYQ · PDBe 5VYQ · UniProt R4MIX2
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