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Crystal structure of the N-formyltransferase RV3404C from mycobacterium tuberculosis in complex with ydp-QUI4N and folinic acid

Analyse Crystal structure of the N-formyltransferase RV3404C from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5VYQ
Type: protein
Length: 470 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: R4MIX2
Ligands: EP1, 0FX, TYD, NA, LI, K, CL

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	236	—	R4MIX2
B	—	protein	234	—	R4MIX2

Ligands and binding sites

EP1 · 3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid · ligand · 2 copies · chains A, B
0FX · dTDP-4-amino-4,6-dideoxyglucose · ligand · chains A
TYD · Thymidine-5'-diphosphate · ligand · chains B
NA · Sodium ion · metal · 4 copies · chains A, B
LI · Lithium ion · metal · chains A
K · Potassium ion · metal · chains B
CL · Chloride ion · ion · 3 copies · chains A, B
EDO · 1,2-ethanediol · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VYQ · Crystal structure of the N-formyltransferase Rv3404c from mycobacterium tuberculosis in… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt R4MIX2
Elsewhere: RCSB PDB 5VYQ · PDBe 5VYQ · UniProt R4MIX2

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