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Ligand · LI

LI · Lithium ion

LI, Lithium ion (Li +1, 6.9 g/mol), in the MolNFT structures on GenesisL1: bound in 78 records (56 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
LI
Formula
Li +1
Class
metal
Structures
78
PDB entries
56

Binding sites

LI in 78 structures; the first of them:

  • 5DJG · Structure of M. tuberculosis CysQ, a PAP phosphatase with PAP, Mg, and Li bound · LI A302 · binds GLU73, ASP91, ASP94, TRP211, ASP212
  • 5FHM · Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with… · LI A312 · binds ASN242, ASP248, SER217
  • 5FOH · Crystal structure of the catalytic domain of NcLPMO9A · LI A1230 · binds SER183
  • 5FTI · Crystal structure of the GluA2 K738M-T744K LBD in complex with glutamate (lithium form) · LI A901 · binds GLU486, ILE489, ASP490, MET738
  • 5G02 · Crystal Structure of zebrafish Protein Arginine Methyltransferase 2 with SFG · LI A1411 · binds ASP73
  • 5I5A · quasi racemic structure of allo-Ile7-ShK and D-ShK · LI A104 · binds ARG24, LEU25, DCY32, GLY33, DTH34
  • 5I5B · quasi racemic structure of allo-Thr13-ShK and D-ShK · LI A104 · binds ILE7, ARG11, TYR23
  • 5I5C · X-ray crystal structure of allo-Thr31-ShK · LI B101 · binds CYS12, THR13, GLN16, CYS17, TYR23, CYS28, CYS32
  • 5LRY · E coli [NiFe] Hydrogenase Hyd-1 mutant E28D · LI M605 · binds ASP93, ILE97, LYS98, ASN312, PHE314
  • 5NFK · Crystal structure of YrbA from Sinorhizobium meliloti in complex with nickel. · LI A101 · binds ASP25, LEU26, ALA27, GLY28, ASP29, GLY30, ASP31, HIS32 and 1 more
  • 5NFM · Crystal structure of YrbA from Sinorhizobium meliloti in complex with copper. · LI A101 · binds ASP25, LEU26, ALA27, GLY28, ASP29, GLY30, ASP31, HIS32 and 1 more
  • 5NG9 · Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with agonist… · LI A303 · binds GLU97, ILE100, ASP101
  • 5O4J · HcgC from Methanococcus maripaludis cocrystallized with SAH and pyridinol · LI A305 · binds SER168, SER169, HIS140, ASP141, LYS142, LYS173, GLU194, ASP196
  • 5TVK · Crystal Structure of putative plasmid partition protein (BB_S35) from Borrelia… · LI A302 · binds LYS36, ASN84
  • 5W8S · Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations · LI A403 · binds GLN364, ARG366, CYS367
  • 5XVS · Crystal structure of UDP-GlcNAc 2-epimerase NeuC complexed with UDP · LI A401 · binds ILE24, GLN25, GLN26, ASP27, PRO28, LEU30
  • 5ZLR · Structure of NeuC · LI A402 · binds ILE24, GLN25, GLN26, ASP27, PRO28, LEU30, GLU31
  • 6DOY · Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA… · LI A213 · binds ASP71, GLU109, ASP132, U4, C5
  • 6GAL · Structure of fully reduced Hydrogenase (Hyd-1) variant E28Q collected at pH 10 · LI M605 · binds GLU58, ASN184
  • 6JQ1 · Crystal Structure of DdrO from Deinococcus geothermalis · LI A201 · binds THR68, VAL69, PHE78
  • 6K53 · A variant of metagenome-derived GH6 cellobiohydrolase, HmCel6A (P88S/L230F/F414S) · LI A501 · binds ASP2, ASN3, THR280, ILE281
  • 6Q54 · Structure of GluA2 ligand-binding domain (S1S2J) in complex with the agonist… · LI A314 · binds ALA2, THR5

Residues it binds most

ASP 64, ASN 48, ILE 44, ARG 38, GLU 40, LEU 36, THR 36, GLN 19, LYS 19, TYR 15 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • GOL · Glycerol
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • SF4 · Iron/sulfur cluster
  • MG · Magnesium ion
  • NA · Sodium ion
  • PEG · Di(hydroxyethyl)ether
  • F3S · FE3-S4 cluster
  • SF3 · FE4-S3 cluster
  • NI · Nickel (II) ion
  • FLC · Citrate anion

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