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MolNFT v1 · #137723 · protein

Structure of the human MESH1-NADPH complex

5VXA: “Structure of the human MESH1-NADPH complex”. X-ray diffraction, 3 ligands (NDP, ZN, NA). MolNFT v1 #137723 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5VXA
Type
protein
Length
356 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q8N4P3
Ligands
NDP, ZN, NA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein178—Q8N4P3

Ligands and binding sites

  • NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · 2 copies · chains A, B
  • ZN · Zinc ion · metal · 2 copies · chains A, B
  • NA · Sodium ion · metal
  • EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
  • BME · Beta-mercaptoethanol · additive · 2 copies · chains A, B
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5VXA · Structure of the human Mesh1-NADPH complex · the same entry in another collection · chain A against A, TM-score 1.00
  • Q8N4P3 · AlphaFold monomer V2.0 prediction for guanosine-3',5'-BIS(DIPHOSPHATE)… · a predicted model of the same protein · chain A against A, TM-score 1.00

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