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MolNFT v1 · #137526 · protein

2.35-ångström in situ mylar structure of human A2A adenosine receptor at 100 K

5VRA: “2.35-ångström in situ mylar structure of human A2A adenosine receptor at 100 K”. X-ray diffraction, 5 ligands (OLA, CLR, ZMA). MolNFT v1 #137526 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5VRA
Type
protein
Length
390 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P29274, P0ABE7
Ligands
OLA, CLR, ZMA, OLB, NA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein390—P29274, P0ABE7

Ligands and binding sites

  • OLA · Oleic acid · ligand · 10 copies · chains A
  • CLR · Cholesterol · ligand · 3 copies · chains A
  • ZMA · 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-A][1,3, 5]triazin-5-yl)amino]ethyl}phenol · ligand · chains A
  • OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · ligand · chains A
  • NA · Sodium ion · metal · chains A
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5VRA · 2.35-Angstrom In situ Mylar structure of human A2A adenosine receptor at 100 K · the same entry in another collection · chain A against A, TM-score 1.00
  • P29274 · AlphaFold monomer V2.0 prediction for adenosine receptor A2A (P29274) · a predicted model of the same protein · chain A against A, TM-score 0.78
  • P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.26

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