MolNFT v1 · #137472 · protein
E. COLI quinol fumarate reductase frda E245Q mutation
5VPN: “E. COLI quinol fumarate reductase frda E245Q mutation”. X-ray diffraction, 4 ligands (FAD, FES, F3S). MolNFT v1 #137472 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VPN
- Type
- protein
- Length
- 2,146 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00363, P0AC49, P0A8Q0, P0A8Q3
- Ligands
- FAD, FES, F3S, SF4
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 577 | — | P00363 |
| B, F | — | protein | 243 | — | P0AC49 |
| C, G | — | protein | 130 | — | P0A8Q0 |
| D, H | — | protein | 119 | — | P0A8Q3 |
| E | — | protein | 585 | — | P00363 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, E
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains B, F
- F3S · FE3-S4 cluster · ligand · 2 copies · chains B, F
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains B, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VPN · E. coli Quinol fumarate reductase FrdA E245Q mutation · the same entry in another collection · chain H against H, TM-score 1.00
- P00363 · AlphaFold monomer V2.0 prediction for fumarate reductase flavoprotein subunit (P00363) · a predicted model of the same protein · chain E against A, TM-score 0.99
- P0AC49 · AlphaFold monomer V2.0 prediction for fumarate reductase iron-sulfur subunit (P0AC49) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00363
- Every structure of UniProt P0AC49
- Every structure of UniProt P0A8Q0
- Every structure of UniProt P0A8Q3
- Elsewhere: RCSB PDB 5VPN · PDBe 5VPN · UniProt P00363 · UniProt P0AC49 · UniProt P0A8Q0 · UniProt P0A8Q3
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