MolNFT v1 · #137255 · protein
BG505 SOSIP.664 in complex with broadly neutralizing antibodies BG1 and 8ANC195
5VIY: “BG505 SOSIP.664 in complex with broadly neutralizing antibodies BG1 and 8ANC195”. Electron microscopy, 4 ligands (NAG, MAN, BMA). MolNFT v1 #137255 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VIY
- Type
- protein
- Length
- 3,940 residues
- Chains
- 16
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6, P01834, S6B291, Q8TCD0
- Ligands
- NAG, MAN, BMA, FUC
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 133 | — | Q2N0S6 |
| D, E, F | — | protein | 449 | — | Q2N0S6 |
| G | — | protein | 212 | — | P01834 |
| H, J | — | protein | 223 | — | S6B291 |
| I | — | protein | 213 | — | P01834 |
| K, M, O | — | protein | 227 | — | S6B291 |
| L, N, P | — | protein | 214 | — | Q8TCD0 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 100 copies · chains A, N, B, L, C, P, D, J, K, E, O, F, H, M
- MAN · alpha-D-mannopyranose · sugar · 37 copies · chains L, J, K, D, O, E, H, I, M, F
- BMA · beta-D-mannopyranose · sugar · 25 copies · chains J, K, O, H, M
- FUC · alpha-L-fucopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VIY · BG505 SOSIP.664 in complex with broadly neutralizing antibodies BG1 and 8ANC195 · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Every structure of UniProt P01834
- Every structure of UniProt S6B291
- Every structure of UniProt Q8TCD0
- Elsewhere: RCSB PDB 5VIY · PDBe 5VIY · UniProt Q2N0S6 · UniProt P01834 · UniProt S6B291 · UniProt Q8TCD0
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