MolNFT v1 · #136933 · protein

Structure of DCN1 bound to nacm-cov

5V88: “Structure of DCN1 bound to nacm-cov”. X-ray diffraction, 1 ligand (8ZD). MolNFT v1 #136933 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5V88
Type: protein
Length: 363 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: D9IEF7, Q96GG9
Ligands: 8ZD

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	363	—	D9IEF7, Q96GG9

Ligands and binding sites

8ZD · N-{2-[({1-[(2R)-pentan-2-yl]piperidin-4-yl}{[3-(trifluoromethyl)phenyl]carbamoyl}amino) methyl]phenyl}propanamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5V88 · Structure of DCN1 bound to NAcM-COV · the same entry in another collection · chain A against A, TM-score 1.00
Q96GG9 · AlphaFold monomer V2.0 prediction for DCN1-like protein 1 (Q96GG9) · a predicted model of the same protein · chain A against A, TM-score 0.57

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D9IEF7
Every structure of UniProt Q96GG9
Elsewhere: RCSB PDB 5V88 · PDBe 5V88 · UniProt D9IEF7 · UniProt Q96GG9

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