MolNFT v1 · #136515 · protein
Serial millisecond crystallography of membrane and soluble protein micro-crystals using synchrotron radiation
5UVI · Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE…: “Serial millisecond crystallography of membrane and soluble protein micro-crystals using synchrotron radiation”. X-ray diffraction, 3 ligands (CLR, ZMA, OLA), 4 pockets…
- PDB
- 5UVI
- Type
- protein
- Length
- 391 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2A
- UniProt
- P29274, P0ABE7
- Ligands
- CLR, ZMA, OLA
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 81% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2A | protein | 391 | 81% helix, 1% strand | P29274, P0ABE7 |
Ligands and binding sites
- CLR · Cholesterol · ligand · 3 copies · chains A
- ZMA · 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-A][1,3, 5]triazin-5-yl)amino]ethyl}phenol · ligand · chains A
- OLA · Oleic acid · ligand · chains A
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 313 | 0.75 | 0.87 | 38 | ZMA |
| 2 | 169 | 0.50 | 0.77 | 27 | empty |
| 3 | 59 | 0.35 | 0.77 | 15 | empty |
| 4 | 56 | 0.28 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5UVI · Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using… · the same entry in another collection · chain A against A, TM-score 1.00
- P29274 · AlphaFold monomer V2.0 prediction for adenosine receptor A2A (P29274) · a predicted model of the same protein · chain A against A, TM-score 0.78
- P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.25
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29274
- Every structure of UniProt P0ABE7
- Elsewhere: RCSB PDB 5UVI · PDBe 5UVI · UniProt P29274 · UniProt P0ABE7
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