MolNFT v1 · #136016 · protein
Structure of spermidine N-acetyltransferase speg from vibrio cholerae
5UG4: “Structure of spermidine N-acetyltransferase speg from vibrio cholerae”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #136016 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UG4
- Type
- protein
- Length
- 510 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9KL03
- Ligands
- CA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 170 | — | Q9KL03 |
| B | — | protein | 169 | — | Q9KL03 |
| C | — | protein | 171 | — | Q9KL03 |
Ligands and binding sites
- CA · Calcium ion · metal · 9 copies · chains A, C, B
- ACT · Acetate ion · additive · 3 copies · chains A, B, C
- MRD · (4R)-2-methylpentane-2,4-diol · additive · chains A
- EOH · Ethanol · additive · chains B
- MOH · Methanol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UG4 · Structure of spermidine N-acetyltransferase SpeG from Vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KL03 · AlphaFold monomer V2.0 prediction for spermidine N(1)-acetyltransferase (Q9KL03) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KL03
- Elsewhere: RCSB PDB 5UG4 · PDBe 5UG4 · UniProt Q9KL03
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