MolNFT v1 · #135906 · protein
Class II fructose-1,6-bisphosphate aldolase E149A variant of helicobacter pylori with cleavage products
5UD0: “Class II fructose-1,6-bisphosphate aldolase E149A variant of helicobacter pylori with cleavage products”. X-ray diffraction, 5 ligands (13P, G3H, ZN). MolNFT v1 #135906 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UD0
- Type
- protein
- Length
- 573 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P56109
- Ligands
- 13P, G3H, ZN, NA, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 282 | — | P56109 |
| B | — | protein | 291 | — | P56109 |
Ligands and binding sites
- 13P · 1,3-dihydroxyacetonephosphate · ligand · chains B
- G3H · Glyceraldehyde-3-phosphate · ligand · chains A, B
- ZN · Zinc ion · metal · 3 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UD0 · Class II fructose-1,6-bisphosphate aldolase E149A variant of Helicobacter pylori with… · the same entry in another collection · chain A against A, TM-score 1.00
- P56109 · AlphaFold monomer V2.0 prediction for fructose-bisphosphate aldolase (P56109) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56109
- Elsewhere: RCSB PDB 5UD0 · PDBe 5UD0 · UniProt P56109
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