MolNFT v1 · #135478 · protein
Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample in complex with sisomicin
5U08: “Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic…”. X-ray diffraction, 3 ligands (SIS, CA, MG). MolNFT v1 #135478 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5U08
- Type
- protein
- Length
- 601 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A059WZ16
- Ligands
- SIS, CA, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 152 | — | A0A059WZ16 |
| B, C | — | protein | 150 | — | A0A059WZ16 |
| D | — | protein | 149 | — | A0A059WZ16 |
Ligands and binding sites
- SIS · (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside · ligand · 4 copies · chains A, B, D, C
- CA · Calcium ion · metal · 5 copies · chains A, B, D, C
- MG · Magnesium ion · metal · 3 copies · chains A, D
- ACT · Acetate ion · additive · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5U08 · Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A059WZ16
- Elsewhere: RCSB PDB 5U08 · PDBe 5U08 · UniProt A0A059WZ16
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