MolNFT v1 · #135397 · protein + DNA
DNA polymerase mu pre-catalytic ground state ternary complex, CA2+
5TXX: “DNA polymerase mu pre-catalytic ground state ternary complex, CA2+”. X-ray diffraction, 3 ligands (TTP, CA, NA). MolNFT v1 #135397 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TXX
- Type
- protein + DNA
- Length
- 346 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NP87
- Ligands
- TTP, CA, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 329 | — | Q9NP87 |
| T | — | dna | 9 | — | — |
| P | — | dna | 4 | — | — |
| D | — | dna | 4 | — | — |
Ligands and binding sites
- TTP · Thymidine-5'-triphosphate · ligand · chains A, T, P
- CA · Calcium ion · metal · 2 copies · chains A, P
- NA · Sodium ion · metal · chains A, P
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, T, P
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5TXX · DNA Polymerase Mu Pre-Catalytic Ground State Ternary Complex, Ca2+ · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NP87 · AlphaFold monomer V2.0 prediction for DNA-directed DNA/RNA polymerase mu (Q9NP87) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NP87
- Elsewhere: RCSB PDB 5TXX · PDBe 5TXX · UniProt Q9NP87
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.