MolNFT v1 · #135122 · protein

Crystal structure of mouse protocadherin-15 EC7-8 V875A

5TPK: “Crystal structure of mouse protocadherin-15 EC7-8 V875A”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #135122 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5TPK
Type: protein
Length: 202 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protocadherin-15
UniProt: Q99PJ1
Ligands: CA

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protocadherin-15	protein	202	1% helix, 46% strand	Q99PJ1

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5TPK · Crystal Structure of Mouse Protocadherin-15 EC7-8 V875A · the same entry in another collection · chain A against A, TM-score 1.00
Q99PJ1 · AlphaFold monomer V2.0 prediction for protocadherin-15 (Q99PJ1) · a predicted model of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99PJ1
Elsewhere: RCSB PDB 5TPK · PDBe 5TPK · UniProt Q99PJ1

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