MolNFT v1 · #135016 · protein
Crystal structure of the er-alpha ligand-binding domain (Y537S) in complex with the obhs-asc compound, 7-(4-((1R,4S,6R)-6-((4- BROMOPHENOXY)SULFONYL)-3-(4-hydroxyphenyl)-7-OXABICYCLO[2.2.1]HEPT-2- en-2-YL)PHENOXY)HEPTANOIC acid
5TM8 · Estrogen receptor: “Crystal structure of the er-alpha ligand-binding domain (Y537S) in complex with the obhs-asc compound…”. X-ray diffraction, 1 ligand (7K6), 7 pockets (best druggability 0.81). MolNFT v1 #135016 on GenesisL1: 3D…
- PDB
- 5TM8
- Type
- protein
- Length
- 484 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Estrogen receptor; Nuclear receptor coactivator 2
- UniProt
- P03372, Q15596
- Ligands
- 7K6
- Pockets
- 7 · best druggability 0.81
Structure
x-ray diffraction · 4 distinct chains · 69% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Estrogen receptor | protein | 235 | 68% helix, 3% strand | P03372 |
| B | Estrogen receptor | protein | 228 | 70% helix, 3% strand | P03372 |
| C | Nuclear receptor coactivator 2 | protein | 11 | 64% helix, 0% strand | Q15596 |
| D | Nuclear receptor coactivator 2 | protein | 10 | 70% helix, 0% strand | Q15596 |
Ligands and binding sites
- 7K6 · 7-{4-[(1S,4S,6R)-6-[(4-bromophenoxy)sulfonyl]-3-(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-2-en-2-yl]phenoxy}heptanoic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 339 | 0.81 | 0.90 | 35 | 7K6 |
| 2 | 338 | 0.80 | 0.89 | 36 | 7K6 |
| 3 | 94 | 0.65 | 0.90 | 19 | empty |
| 4 | 93 | 0.64 | 0.89 | 16 | empty |
| 5 | 142 | 0.42 | 0.75 | 16 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1742 Ų buried · 27 hydrogen bonds · protein-protein
- B–D · 527 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 503 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5TM8 · Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with the… · the same entry in another collection · chain A against A, TM-score 1.00
- P03372 · AlphaFold monomer V2.0 prediction for estrogen receptor (P03372) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03372
- Every structure of UniProt Q15596
- Elsewhere: RCSB PDB 5TM8 · PDBe 5TM8 · UniProt P03372 · UniProt Q15596
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.