MolNFT v1 · #134867 · protein
Cryo-EM structure of a BG505 env-SCD4-17B-8ANC195 complex
5THR: “Cryo-EM structure of a BG505 env-SCD4-17B-8ANC195 complex”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #134867 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5THR
- Type
- protein
- Length
- 3,171 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6, P01730
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 124 | — | Q2N0S6 |
| B, C | — | protein | 123 | — | Q2N0S6 |
| D, E, F | — | protein | 364 | — | Q2N0S6 |
| G, H | — | protein | 98 | — | P01730 |
| I | — | protein | 97 | — | P01730 |
| J, K, L | — | protein | 107 | — | — |
| M, N, O | — | protein | 127 | — | — |
| P, R, T | — | protein | 131 | — | — |
| Q, S, U | — | protein | 107 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 18 copies · chains D, T, E, R, F, P
- MAN · alpha-D-mannopyranose · sugar · 15 copies · chains T, R, P
- BMA · beta-D-mannopyranose · sugar · 9 copies · chains T, R, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5THR · Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex · the same entry in another collection · chain U against U, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Every structure of UniProt P01730
- Elsewhere: RCSB PDB 5THR · PDBe 5THR · UniProt Q2N0S6 · UniProt P01730
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