MolNFT v1 · #134864 · protein
Crystal structure of mycobacterium tuberculosis proteasome in complex with N,C-capped dipeptide inhibitor PKS2205
5THO: “Crystal structure of mycobacterium tuberculosis proteasome in complex with N,C-capped dipeptide inhibitor…”. X-ray diffraction, 1 ligand (7C7). MolNFT v1 #134864 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5THO
- Type
- protein
- Length
- 6,157 residues
- Chains
- 28
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A5U4D5, A5U4D6
- Ligands
- 7C7
Structure
x-ray diffraction · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, G, O | — | protein | 218 | — | A5U4D5 |
| B | — | protein | 215 | — | A5U4D5 |
| C | — | protein | 217 | — | A5U4D5 |
| D | — | protein | 216 | — | A5U4D5 |
| F, R | — | protein | 217 | — | A5U4D5 |
| H, I, J, N, X, Z | — | protein | 222 | — | A5U4D6 |
| K, L, M, V, W, Y, a, b | — | protein | 223 | — | A5U4D6 |
| P, T | — | protein | 217 | — | A5U4D5 |
| Q | — | protein | 216 | — | A5U4D5 |
| S | — | protein | 221 | — | A5U4D5 |
| U | — | protein | 216 | — | A5U4D5 |
Ligands and binding sites
- 7C7 · N,N-diethyl-N~2~-(3-phenylpropanoyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide · ligand · 14 copies · chains H, I, J, K, L, M, N, V, W, X, Y, Z, a, b
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5THO · Crystal Structure of Mycobacterium Tuberculosis Proteasome in complex with N,C-capped… · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5U4D5
- Every structure of UniProt A5U4D6
- Elsewhere: RCSB PDB 5THO · PDBe 5THO · UniProt A5U4D5 · UniProt A5U4D6
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