MolNFT v1 · #134709 · protein + DNA
Crystal structure of human APOBEC3B variant complexed with ssdna
5TD5: “Crystal structure of human APOBEC3B variant complexed with ssdna”. X-ray diffraction, 3 ligands (ZN, IOD, CL). MolNFT v1 #134709 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TD5
- Type
- protein + DNA
- Length
- 183 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UH17
- Ligands
- ZN, IOD, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 179 | — | Q9UH17 |
| C | — | dna | 4 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- IOD · Iodide ion · ion · 9 copies · chains A, C
- CL · Chloride ion · ion · 2 copies · chains A, C
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q9UH17 · AlphaFold monomer V2.0 prediction for DNA dc->du-editing enzyme apobec-3B (Q9UH17) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UH17
- Elsewhere: RCSB PDB 5TD5 · PDBe 5TD5 · UniProt Q9UH17
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