MolNFT v1 · #134348 · protein
Crystal structure of phaeospaeria nodrum fructosyl peptide oxidase mutant ASN56ALA
5T1F · Uncharacterized protein: “Crystal structure of phaeospaeria nodrum fructosyl peptide oxidase mutant ASN56ALA”. X-ray diffraction, 1 ligand (FAD), 4 pockets (best druggability 0.82). MolNFT v1 #134348 on GenesisL1: 3D structure…
- PDB
- 5T1F
- Type
- protein
- Length
- 431 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q0UIL6
- Ligands
- FAD
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 431 | 31% helix, 26% strand | Q0UIL6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1010 | 0.82 | 0.83 | 99 | FAD |
| 2 | 55 | 0.68 | 0.96 | 20 | empty |
| 3 | 61 | 0.46 | 0.83 | 20 | empty |
| 4 | 73 | 0.42 | 0.80 | 19 | empty |
Modifications
Observed in the structure: 1 cofactor (flavinylation).
Compared structures
- 5T1F · Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase mutant Asn56Ala · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0UIL6
- Elsewhere: RCSB PDB 5T1F · PDBe 5T1F · UniProt Q0UIL6
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