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MolNFT v1 · #134261 · protein

Crystal structure of ZMPSTE24

5SYT: “Crystal structure of ZMPSTE24”. X-ray diffraction, 4 ligands (PC1, CXE, ZN). MolNFT v1 #134261 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5SYT
Type
protein
Length
444 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
O75844
Ligands
PC1, CXE, ZN, SO4

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein444—O75844

Ligands and binding sites

  • PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · ligand · chains A
  • CXE · Pentaethylene glycol monodecyl ether · ligand · chains A
  • ZN · Zinc ion · metal · chains A
  • SO4 · Sulfate ion · ion · 2 copies · chains A
  • C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 12 copies · chains A
  • DMS · Dimethyl sulfoxide · additive · 3 copies · chains A
  • GOL · Glycerol · additive · 2 copies · chains A
  • PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • O75844 · AlphaFold monomer V2.0 prediction for caax prenyl protease 1 homolog (O75844) · a predicted model of the same protein · chain A against A, TM-score 0.97

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