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MolNFT v1 · #131561 · protein

Pandda analysis group deposition -- crystal structure of DCLRE1A after initial refinement with no ligand modelled (structure 222)

5Q8D: “Pandda analysis group deposition -- crystal structure of DCLRE1A after initial refinement with no ligand…”. X-ray diffraction, 1 ligand (NI). MolNFT v1 #131561 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5Q8D
Type
protein
Length
341 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q6PJP8
Ligands
NI

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein341—Q6PJP8

Ligands and binding sites

  • NI · Nickel (II) ion · metal · chains A
  • MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5Q8D · PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q6PJP8 · AlphaFold monomer V2.0 prediction for DNA cross-link repair 1A protein (Q6PJP8) · a predicted model of the same protein · chain A against A, TM-score 1.00

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