MolNFT v1 · #130366 · protein
Crystal structure of factor viia in complex with 1-[[3-[4-(5-amino-1H- PYRROLO[3,2-B]PYRIDIN-2-yl)-5-hydroxypyrazol-1-YL]PHENYL]METHYL]-3- phenylurea
5PB3: “Crystal structure of factor viia in complex with 1-[[3-[4-(5-amino-1H…”. X-ray diffraction, 4 ligands (9S1, CA, CL). MolNFT v1 #130366 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5PB3
- Type
- protein
- Length
- 308 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08709
- Ligands
- 9S1, CA, CL, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 58 | — | P08709 |
| C | — | protein | 250 | — | P08709 |
Ligands and binding sites
- 9S1 · N-({3-[4-(5-amino-1H-pyrrolo[3,2-b]pyridin-2-yl)-5-hydroxy-1H-pyrazol-1-yl]phenyl}methyl)-N'-phenylurea · ligand · chains C
- CA · Calcium ion · metal · chains C
- CL · Chloride ion · ion · 3 copies · chains C
- SO4 · Sulfate ion · ion · 2 copies · chains A, C
- GOL · Glycerol · additive · 3 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P08709 · AlphaFold monomer V2.0 prediction for coagulation factor VII (P08709) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08709
- Elsewhere: RCSB PDB 5PB3 · PDBe 5PB3 · UniProt P08709
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