MolNFT v1 · #130348 · protein
Crystal structure of factor viia in complex with N-[[4-(aminomethyl)- 2-(2-amino-2-OXOETHOXY)PHENYL]METHYL]-2-(4-hydroxyphenyl)-2- METHOXYACETAMIDE;HYDROCHLORIDE
5PAK: “Crystal structure of factor viia in complex with N-[[4-(aminomethyl)…”. X-ray diffraction, 3 ligands (7YP, CA, SO4). MolNFT v1 #130348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5PAK
- Type
- protein
- Length
- 307 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08709
- Ligands
- 7YP, CA, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 57 | — | P08709 |
| C | — | protein | 250 | — | P08709 |
Ligands and binding sites
- 7YP · (2~{S})-~{N}-[[4-(aminomethyl)-2-(2-azanyl-2-oxidanylidene-ethoxy)phenyl]methyl]-2-(4-hydroxyphenyl)-2-methoxy-ethanami de · ligand · chains C
- CA · Calcium ion · metal · chains C
- SO4 · Sulfate ion · ion · 2 copies · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P08709 · AlphaFold monomer V2.0 prediction for coagulation factor VII (P08709) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08709
- Elsewhere: RCSB PDB 5PAK · PDBe 5PAK · UniProt P08709
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