MolNFT v1 · #129713 · protein
Structure of retromer VPS29-VPS35C subunits complexed with ridl harpin loop (163-176)
5OSI: “Structure of retromer VPS29-VPS35C subunits complexed with ridl harpin loop (163-176)”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #129713 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OSI
- Type
- protein
- Length
- 1,940 residues
- Chains
- 11
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UBQ0, Q96QK1, G8UZ99
- Ligands
- NA
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, G, J | — | protein | 182 | — | Q9UBQ0 |
| B | — | protein | 299 | — | Q96QK1 |
| C, I | — | protein | 12 | — | G8UZ99 |
| E | — | protein | 302 | — | Q96QK1 |
| F | — | protein | 11 | — | G8UZ99 |
| H | — | protein | 283 | — | Q96QK1 |
| K | — | protein | 293 | — | Q96QK1 |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains E, H, K
- EDO · 1,2-ethanediol · additive · 11 copies · chains A, B, D, E, G, H, J, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q9UBQ0 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 29… · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q96QK1 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 35… · a predicted model of the same protein · chain H against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBQ0
- Every structure of UniProt Q96QK1
- Every structure of UniProt G8UZ99
- Elsewhere: RCSB PDB 5OSI · PDBe 5OSI · UniProt Q9UBQ0 · UniProt Q96QK1 · UniProt G8UZ99
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