MolNFT v1 · #128850 · protein
NMR structure of the calcium bound form of pulg, major pseudopilin from klebsiella oxytoca T2SS
5O2Y · General secretion pathway protein G: “NMR structure of the calcium bound form of pulg, major pseudopilin from klebsiella oxytoca T2SS”. Solution nmr, 1 ligand (CA), 2 pockets (best druggability 0.35). MolNFT v1 #128850 on GenesisL1…
- PDB
- 5O2Y
- Type
- protein
- Length
- 116 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General secretion pathway protein G
- UniProt
- A0A0G3SCW3
- Ligands
- CA
- Pockets
- 2 · best druggability 0.35
Structure
solution nmr · 1 distinct chain · 35% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | General secretion pathway protein G | protein | 116 | 35% helix, 11% strand | A0A0G3SCW3 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.35 | 0.78 | 14 | empty |
| 2 | 65 | 0.32 | 0.75 | 14 | empty |
Compared structures
- 5O2Y · NMR structure of the calcium bound form of PulG, major pseudopilin from Klebsiella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0G3SCW3
- Elsewhere: RCSB PDB 5O2Y · PDBe 5O2Y · UniProt A0A0G3SCW3
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