Research workbench
NMR structure of the calcium bound form of pulg, major pseudopilin from klebsiella oxytoca T2SS
Analyse NMR structure of the calcium bound form of pulg, major pseudopilin from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5O2Y
- Type
- protein
- Length
- 116 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General secretion pathway protein G
- UniProt
- A0A0G3SCW3
- Ligands
- CA
- Pockets
- 2 · best druggability 0.35
Structure
solution nmr · 1 distinct chain · 35% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | General secretion pathway protein G | protein | 116 | 35% helix, 11% strand | A0A0G3SCW3 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.35 | 0.78 | 14 | empty |
| 2 | 65 | 0.32 | 0.75 | 14 | empty |
Compared structures
- 5O2Y · NMR structure of the calcium bound form of PulG, major pseudopilin from Klebsiella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0G3SCW3
- Elsewhere: RCSB PDB 5O2Y · PDBe 5O2Y · UniProt A0A0G3SCW3
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