MolNFT v1 · #128558 · protein
Cytosolic malate dehydrogenase 1
5NUF: “Cytosolic malate dehydrogenase 1”. X-ray diffraction, 4 ligands (NAD, PEO, NA). MolNFT v1 #128558 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NUF
- Type
- protein
- Length
- 991 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P93819
- Ligands
- NAD, PEO, NA, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 331 | — | P93819 |
| B | — | protein | 329 | — | P93819 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 3 copies · chains A, B, C
- PEO · Hydrogen peroxide · ligand · 2 copies · chains A, C
- NA · Sodium ion · metal · 3 copies · chains A, B
- SO4 · Sulfate ion · ion · 8 copies · chains A, B, C
- GOL · Glycerol · additive · 9 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B, C
- ACT · Acetate ion · additive · 2 copies · chains B, C
- PEG · Di(hydroxyethyl)ether · additive · chains A
- FMT · Formic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93819
- Elsewhere: RCSB PDB 5NUF · PDBe 5NUF · UniProt P93819
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