MolNFT v1 · #128490 · protein

Cys-gly dipeptidase glij in complex with CA2+

5NRT: “Cys-gly dipeptidase glij in complex with CA2+”. X-ray diffraction, 2 ligands (CA, MG). MolNFT v1 #128490 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5NRT
Type: protein
Length: 382 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q4WMJ8
Ligands: CA, MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	382	—	Q4WMJ8

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5NRT · Cys-Gly dipeptidase GliJ in complex with Ca2+ · the same entry in another collection · chain A against A, TM-score 1.00
Q4WMJ8 · AlphaFold monomer V2.0 prediction for dipeptidase glij (Q4WMJ8) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4WMJ8
Elsewhere: RCSB PDB 5NRT · PDBe 5NRT · UniProt Q4WMJ8

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