MolNFT v1 · #128198 · protein
E. COLI microcin-processing metalloprotease TLDD/E (tldd E263A mutant) with hexapeptide bound
5NJC: “E. COLI microcin-processing metalloprotease TLDD/E (tldd E263A mutant) with hexapeptide bound”. X-ray diffraction, 2 ligands (NA, ZN). MolNFT v1 #128198 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NJC
- Type
- protein
- Length
- 1,856 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0AGG8, P0AFK0
- Ligands
- NA, ZN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 479 | — | P0AGG8 |
| B | — | protein | 443 | — | P0AFK0 |
| C | — | protein | 480 | — | P0AGG8 |
| D | — | protein | 442 | — | P0AFK0 |
| E, F | — | protein | 6 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A, B, C, D
- ZN · Zinc ion · metal · 2 copies · chains A, E, C, F
- EDO · 1,2-ethanediol · additive · 10 copies · chains A, B, D, C
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NJC · E. coli Microcin-processing metalloprotease TldD/E (TldD E263A mutant) with hexapeptide… · the same entry in another collection · chain F against F, TM-score 1.00
- P0AGG8 · AlphaFold monomer V2.0 prediction for metalloprotease tldd (P0AGG8) · a predicted model of the same protein · chain C against A, TM-score 1.00
- P0AFK0 · AlphaFold monomer V2.0 prediction for metalloprotease pmba (P0AFK0) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGG8
- Every structure of UniProt P0AFK0
- Elsewhere: RCSB PDB 5NJC · PDBe 5NJC · UniProt P0AGG8 · UniProt P0AFK0
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