MolNFT v1 · #128197 · protein

E. COLI microcin-processing metalloprotease TLDD/E with actinonin bound

5NJB: “E. COLI microcin-processing metalloprotease TLDD/E with actinonin bound”. X-ray diffraction, 2 ligands (BB2, ZN). MolNFT v1 #128197 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5NJB
Type: protein
Length: 1,849 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0AGG8, P0AFK0
Ligands: BB2, ZN

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	480	—	P0AGG8
B, D	—	protein	445	—	P0AFK0
C	—	protein	479	—	P0AGG8

Ligands and binding sites

BB2 · Actinonin · ligand · 2 copies · chains A, C
ZN · Zinc ion · metal · 2 copies · chains A, C
EDO · 1,2-ethanediol · additive · 9 copies · chains A, B, C, D
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5NJB · E. coli Microcin-processing metalloprotease TldD/E with actinonin bound · the same entry in another collection · chain A against A, TM-score 1.00
P0AGG8 · AlphaFold monomer V2.0 prediction for metalloprotease tldd (P0AGG8) · a predicted model of the same protein · chain C against A, TM-score 1.00
P0AFK0 · AlphaFold monomer V2.0 prediction for metalloprotease pmba (P0AFK0) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0AGG8
Every structure of UniProt P0AFK0
Elsewhere: RCSB PDB 5NJB · PDBe 5NJB · UniProt P0AGG8 · UniProt P0AFK0

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