MolNFT v1 · #128191 · protein
E. COLI microcin-processing metalloprotease TLDD/E with phosphate bound
5NJ5: “E. COLI microcin-processing metalloprotease TLDD/E with phosphate bound”. X-ray diffraction, 2 ligands (ZN, PO4). MolNFT v1 #128191 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NJ5
- Type
- protein
- Length
- 1,847 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0AGG8, P0AFK0
- Ligands
- ZN, PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 480 | — | P0AGG8 |
| B, D | — | protein | 444 | — | P0AFK0 |
| C | — | protein | 479 | — | P0AGG8 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, C
- PO4 · Phosphate ion · ion · 2 copies · chains A, C
- EDO · 1,2-ethanediol · additive · 12 copies · chains A, B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NJ5 · E. coli Microcin-processing metalloprotease TldD/E with phosphate bound · the same entry in another collection · chain A against A, TM-score 1.00
- P0AGG8 · AlphaFold monomer V2.0 prediction for metalloprotease tldd (P0AGG8) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P0AFK0 · AlphaFold monomer V2.0 prediction for metalloprotease pmba (P0AFK0) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGG8
- Every structure of UniProt P0AFK0
- Elsewhere: RCSB PDB 5NJ5 · PDBe 5NJ5 · UniProt P0AGG8 · UniProt P0AFK0
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