MolNFT v1 · #128167 · protein
Crystal structure of HLA-DRB1*04:01 with modified alpha-enolase peptide 326-340 (arginine 327 to citrulline)
5NIG: “Crystal structure of HLA-DRB1*04:01 with modified alpha-enolase peptide 326-340 (arginine 327 to citrulline)”. X-ray diffraction, 2 ligands (CIR, URE). MolNFT v1 #128167 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NIG
- Type
- protein
- Length
- 391 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01903, P13760, P06733
- Ligands
- CIR, URE
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 180 | — | P01903 |
| B | — | protein | 197 | — | P13760 |
| C | — | protein | 14 | — | P06733 |
Ligands and binding sites
- CIR · Citrulline · ligand · chains A, B, C
- URE · Urea · ligand · chains B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A, B, C
- PGE · Triethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NIG · Crystal structure of HLA-DRB1*04:01 with modified alpha-enolase peptide 326-340 (arginine… · the same entry in another collection · chain A against A, TM-score 1.00
- P01903 · AlphaFold monomer V2.0 prediction for HLA class II histocompatibility antigen, dr alpha… · a predicted model of the same protein · chain A against A, TM-score 0.96
- P06733 · AlphaFold monomer V2.0 prediction for alpha-enolase (P06733) · a predicted model of the same protein · chain C against A, TM-score 0.29
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01903
- Every structure of UniProt P13760
- Every structure of UniProt P06733
- Elsewhere: RCSB PDB 5NIG · PDBe 5NIG · UniProt P01903 · UniProt P13760 · UniProt P06733
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