MolNFT v1 · #128166 · protein
Yeast 20S proteasome in complex with blm-pep activator
5NIF: “Yeast 20S proteasome in complex with blm-pep activator”. X-ray diffraction, 2 ligands (MG, CL). MolNFT v1 #128166 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NIF
- Type
- protein
- Length
- 6,352 residues
- Chains
- 30
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P21243, P23639, P23638, P40303, P32379, P40302, P21242, P38624, P25043, P25451, P22141, P30656, P23724, P30657
- Ligands
- MG, CL
Structure
x-ray diffraction · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, O | — | protein | 241 | — | P21243 |
| B, P | — | protein | 250 | — | P23639 |
| C | — | protein | 241 | — | P23638 |
| D, R | — | protein | 241 | — | P40303 |
| E | — | protein | 236 | — | P32379 |
| F, T | — | protein | 232 | — | P40302 |
| G, U | — | protein | 244 | — | P21242 |
| H, V | — | protein | 196 | — | P38624 |
| I, W | — | protein | 222 | — | P25043 |
| J, X | — | protein | 204 | — | P25451 |
| K, Y | — | protein | 196 | — | P22141 |
| L, Z | — | protein | 212 | — | P30656 |
| M, 1 | — | protein | 222 | — | P23724 |
| N | — | protein | 232 | — | P30657 |
| Q | — | protein | 242 | — | P23638 |
| S | — | protein | 236 | — | P32379 |
| 2 | — | protein | 233 | — | P30657 |
| 3, 4 | — | protein | 6 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 8 copies · chains N, Q
- CL · Chloride ion · ion · 12 copies · chains A, G, K, N, R, S, 2
- EDO · 1,2-ethanediol · additive · 16 copies · chains C, F, N, G, H, I, L, M, O, P, W, U, V, Y, 1, 2
- GOL · Glycerol · additive · 7 copies · chains J, L, M, Q, X, N, V, Z, 1
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NIF · Yeast 20S proteasome in complex with Blm-pep activator · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21243
- Every structure of UniProt P23639
- Every structure of UniProt P23638
- Every structure of UniProt P40303
- Every structure of UniProt P32379
- Every structure of UniProt P40302
- Every structure of UniProt P21242
- Every structure of UniProt P38624
- Every structure of UniProt P25043
- Every structure of UniProt P25451
- Every structure of UniProt P22141
- Every structure of UniProt P30656
- Every structure of UniProt P23724
- Every structure of UniProt P30657
- Elsewhere: RCSB PDB 5NIF · PDBe 5NIF · UniProt P21243 · UniProt P23639 · UniProt P23638 · UniProt P40303 · UniProt P32379 · UniProt P40302 · UniProt P21242 · UniProt P38624 · UniProt P25043 · UniProt P25451 · UniProt P22141 · UniProt P30656 · UniProt P23724 · UniProt P30657
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